Developer documentation

Most users will likely use BornProfiler through the provided scripts. However, in order to extend functionality and develop new tools one can also use the bornprofiler Python module as a library.

Content:

• Core functionality — bornprofiler.core
• APBS calculations: Membrane simulations — bornprofiler.electrostatics
• Analysis of calculations — bornprofiler.analysis
• Configuration file handling and setup — bornprofiler.config
  • Format
  • Meaning of variables
  • Accessing the configuration
• Input/Output for the BornProfiler modules — bornprofiler.io
• Setting up logging — bornprofiler.log
• Helper functions and classes — bornprofiler.utilities
  • Classes
  • Functions